References@                                  Feb. 27, 2012

 

1) mRNA diversity of genes by alternative splicing during neuronal differentiation of NT2 pluripotential human embryonal carcinoma cells by all-trans retinoic acid.

Takao Isogai, Ai Wakamatsu.

gRetinoic Acid: Structure, Mechanisms and Roles in Diseaseh (Editors: Li-Hong Cheng and Yuto Ito), (2012) pp53-86, Nova Science Publishers, Inc. Hauppauge, NY, USA.

ISBN 978-1-62100-597-1_ch3 (Open Access).

https://www.novapublishers.com/catalog/product_info.php?products_id=34516

 

2) HGPD: Human Gene and Protein Database, 2012 update  Yukio Maruyama, Yoshifumi Kawamura, Tetsuo Nishikawa, Takao Isogai, Nobuo Nomura, Naoki Goshima.

Nucleic Acids Res., (2012) 40 (Database issue): D924-D929.

Yukio Maruyama, Yoshifumi Kawamura, Tetsuo Nishikawa, Takao Isogai, Nobuo Nomura, Naoki Goshima.

 

3) Alternative splicing of genes during neuronal differentiation of NT2 pluripotential human embryonal carcinoma cells.

FEBS Letters (2010) 584: 4041-4047.

Ai Wakamatsu, Jun-ichi Imai, Shinya Watanabe, Takao Isogai.

 

4) Identification and Functional Analyses of 11,769 Full-length Human cDNAs Focused on Alternative Splicing.

DNA Research (2009) 16: 371-383.

Ai Wakamatsu, Kouichi Kimura, Jun-ichi Yamamoto, Tetsuo Nishikawa, Nobuo Nomura, Sumio Sugano, Takao Isogai.

 

5) Human Gene and Protein Database (HGPD): a novel database presenting a large quantity of experiment-based results in human proteomics.

Nucleic Acids Research (2009) 37 (Database issue): D762-D766.

Yukio Maruyama, Ai Wakamatsu, Yoshifumi Kawamura, Kouichi Kimura, Jun-ichi Yamamoto, Tetsuo Nishikawa, Yasutomo Kisu, Sumio Sugano, Naoki Goshima, Takao Isogai, Nobuo Nomura.

 

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Naoki Goshima, Yoshifumi Kawamura, Akiko Fukumoto, Aya Miura, Reiko Honma, Ryohei Satoh, Ai Wakamatsu, Jun-ichi Yamamoto, Kouichi Kimura, Tetsuo Nishikawa, Taichi Andoh, Yuki Iida, Kumiko Ishikawa, Emi Ito, Naoko Kagawa, Chie Kaminaga, Kei-ichi Kanehori, Bunsei Kawakami, Kiyokazu Kenmochi, Rie Kimura, Miki Kobayashi, Toshihiro Kuroita, Hisashi Kuwayama, Yukio Maruyama, Kiyoshi Matsuo, Kazuyoshi Minami, Mariko Mitsubori, Masatoshi Mori, Riyo Morishita, Atsushi Murase, Akira Nishikawa, Shigemichi Nishikawa, Toshihiko Okamoto, Noriko Sakagami, Yutaka Sakamoto, Yukari Sasaki, Tomoe Seki, Saki Sono, Akio Sugiyama, Tsuyoshi Sumiya, Tomoko Takayama, Yukiko Takayama, Hiroyuki Takeda, Takushi Togashi, Kazuhide Yahata, Hiroko Yamada, Yuka Yanagisawa, Yaeta Endo, Fumio Imamoto, Yasutomo Kisu, Shigeo Tanaka, Takao Isogai, Jun-ichi Imai, Shinya Watanabe, Nobuo Nomura.

 

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Genome Research (2006) 16: 55-65.

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano.

 

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Nature Genetics (2004) 36: 40-45.

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10) Database and analysis system for cDNA clones obtained from full-length enriched cDNA libraries.

In Silico Biology (2002) 2: 5-18.

Nishikawa, T., Ota, T., Kawai, Y., Ishii, S., Saito, K., Yamamoto, J., Wakamatsu, A., Ozawa, M., Suzuki, Y., Sugano, S., Isogai, T.

 

11) Comparison of sequences of cDNA clones obtained from oligo-capping cDNA libraries with those from unigene.

DNA Research (2001) 8: 255-262.

Nishikawa T, Ota T, Kawai Y, Ishii S, Saito K, Yamamoto JI, Wakamatsu A, Ozawa M, Suzuki Y, Sugano S, Isogai T.

 

12) Diverse transcriptional initiation revealed by fine, large-scale mapping of mRNA start sites.

EMBO Reports (2001) 2: 388-393.

Suzuki, Y., Taira, H., Tsunoda, T., Mizushima-Sugano, J., Sese, J., Hata, H., Ota, T., Isogai, T., Tanaka, T., Morishita, S., Okubo, K., Sakaki, Y., Nakamura, Y., Suyama, A., Sugano, S.

 

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Genome Research (2001) 11: 677-684.

Suzuki, Y., Tsunoda, T., Sese, J., Taira, H., Mizushima-Sugano, J., Hata, H., Ota, T., Isogai, T., Tanaka, T., Nakamura, Y., Suyama, A., Sakaki, Y., Morishita, S., Okubo, K., Sugano, S.

 

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Nishikawa, T., Murakami, K., Harada, N., Ota, T., Sugiyama, T., Nagai, K., Irie, R., Matui, H., Suwa, M., Isogai, T..

 

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Genomics (2000) 64: 286-297.

Suzuki, Y., Ishihara, D., Sasaki, M., Nakagawa, H., Hata, H., Tsunoda, T., Watanabe, M., Komatsu, T., Ota, T., Isogai, T., Suyama, A., Sugano, S.