FLJ Human cDNA Database

FLJ Human cDNA Database Ver3.1 : Data set If you have questions or requests, please send the mail to T. Isogai (flj-cdna@nifty.com) Update 04/08/11 Important Information : This database was created based on "Sequence ID". Please see the information.

Full-length cDNA search You can search human full-length cDNAs by sequence ID as a query.

EST search You can search human ESTs by sequence ID as a query.

cDNA search by keyword You can search human cDNAs by keywords as a query.

cDNA cluster search by keyword You can search human cDNA clusters mapped on human genome by keywords as a query.

BLAST search You can search human cDNAs using DNA sequence as a query by blastn.

cDNA cluster search by genome locus You can search cDNA clusters mapped on human genome by genome locus.

cDNA cluster search by our genome locus number You can search cDNA clusters by our genome locus number.

Full-length cDNA search
You can search human full-length cDNAs in our DB by sequence ID as a query described below.
DDBJ / EMBL / GenBank accession No (ex. AK126746) FLJ ID (ex. FLJ44792) Sequence ID (ex. C-BRACE3039378; BRACE3039378 ...)
ID:

EST search
You can search human ESTs in our DB by sequence ID as a query described below.
DDBJ / EMBL / GenBank accession No (ex. DA119117) Sequence ID (ex. F-BRACE3039378; BRACE3039378 ...)
ID:

cDNA search by keyword
You can search human cDNAs by keywords* as a query.
Search formula
	Multiple words are combined with "AND" automatically. A character "*" matches any symbols. For example, "abc*" searches for words starting with "abc". Keyword search regards any sequence of true word characters (letters, digits, and underscores) as a word. Any word that is too short is ignored. The minimum length of words that are found by keyword searches is four characters.
Keyword:

cDNA cluster search by keyword
You can search human cDNA clusters mapped on human genome by keywords* as a query.
Search formula
	Multiple words are combined with "AND" automatically. A character "*" matches any symbols. For example, "abc*" searches for words starting with "abc". Keyword search regards any sequence of true word characters (letters, digits, and underscores) as a word. Any word that is too short is ignored. The minimum length of words that are found by keyword searches is four characters.
Keyword:

BLAST search
You can search human cDNAs using DNA sequence as a query by blastn.
Sequence:

cDNA cluster search by genome locus
You can search cDNA clusters mapped on human genome by human genome locus.
Chromosome No:	chr1 chr1_random chr2 chr2_random chr3 chr3_random chr4 chr4_random chr5 chr5_h2_hap1 chr5_random chr6 chr6_cox_hap1 chr6_qbl_hap2 chr6_random chr7 chr7_random chr8 chr8_random chr9 chr9_random chr10 chr11 chr12 chr13 chr13_random chr14 chr15 chr15_random chr16 chr16_random chr17 chr17_random chr18 chr19 chr19_random chr20 chr21 chr21_random chr22 chr22_random chrM chrX chrX_random chrY
Locus of chromosome:	[bp] <-----> [bp]

cDNA cluster search by our genome locus number
You can search cDNA clusters by our genome locus number described below.
Locus Number (ex. chr1+5241; chr6-4813 ...)
Locus No:

	* Keyword search
		All words described below in our DB will be effectively hit for keyword searches.
		cDNA definitions blastp results against Swiss-Prot and RefSeq (<1-E10 & up to three) Pfam results (<1-E10) PROSITE results GO (Gene Ontology) terms picked up from blastp and Pfam results.